STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0423Putative hpch/hpai aldolase; protein; Belongs to the HpcH/HpaI aldolase family. (267 aa)    
Predicted Functional Partners:
RSp0419
Probable siderophore synthetase component protein.
 
    0.873
RSp0418
Probable ornithine cyclodeaminase protein.
 
    0.820
RSp0421
Probable siderophore synthetase component protein.
 
    0.814
sbnA
Probable cysteine synthase protein; Catalyzes the synthesis of N-((2S)-2-amino-2-carboxyethyl)-L- glutamate (ACEGA) from O-phospho-L-serine and L-glutamate.
  
    0.800
RSp0422
Probable siderophore synthetase component protein.
  
    0.787
ssd
Probable staphyloferrin b siderophore synthesis decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
       0.782
RSp0420
Putative efflux transmembrane protein.
  
    0.780
hpaF
Putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase protein.
 
  
 0.699
RSp0416
Probable ferric siderophore receptor outer membrane signal peptide protein.
  
    0.577
RSp0899
Probable hydratase/decarboxylase; protein.
 
  
 0.562
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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