STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0431Putative amine oxidase; oxidoreductase protein. (378 aa)    
Predicted Functional Partners:
RSp0432
Putative transcriptional activator transcription regulator protein.
 
     0.929
RSc1606
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 0.766
RSc0919
Putative deacetylase protein.
   
 0.735
RSp0433
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.637
RSp0430
Probable alcohol dehydrogenase (adh-ht) oxidoreductase protein.
 
     0.581
RSp1029
Putative transmembrane acyl-coa desaturase (fatty acid desaturase) oxidoreductase protein.
  
   
 0.580
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.520
dnaN
Probable dna polymerase III (beta chain) protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required f [...]
   
    0.509
RSc3417
Hypothetical metal-dependent phosphohydrolase, hd region; protein.
  
     0.473
crtB
Putative phytoene synthase protein.
   
  
 0.469
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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