STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0474Putative general secretion pathway gspd-related protein; Belongs to the bacterial secretin family. (698 aa)    
Predicted Functional Partners:
RSp0471
Putative general secretion pathway gspg-related transmembrane protein.
 
  
 0.950
RSp0469
Probable transmembrane protein.
 
  
 0.949
RSp0470
Probable general secretion pathway gspg-related transmembrane protein.
 
  
 0.948
RSp0467
Putative general secretion pathway gspf-related transmembrane protein.
 
  
 0.879
RSp0468
Probable general secretion pathway gspg-related transmembrane protein.
 
  
 0.859
hrcR
Hrp conserved hrcr transmembrane protein; Involved in the secretion of PopA, a proteinaceous elicitor of the hypersensitivity response in plants; Belongs to the FliP/MopC/SpaP family.
  
 
 0.853
hrcT
Hrp conserved hrct transmembrane protein.
  
 
 0.840
hrcS
Hrp conserved hrcs transmembrane protein.
  
 
 0.820
hrcJ
Hrp conserved lipoprotein hrcj transmembrane.
  
 
 0.815
RSc2300
Putative cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
 
  
 0.797
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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