STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0474Putative general secretion pathway gspd-related protein; Belongs to the bacterial secretin family. (698 aa)    
Predicted Functional Partners:
RSp0471
Putative general secretion pathway gspg-related transmembrane protein.
  
 0.951
RSp0469
Probable transmembrane protein.
 
  
 0.949
RSp0470
Probable general secretion pathway gspg-related transmembrane protein.
  
 0.949
RSp0467
Putative general secretion pathway gspf-related transmembrane protein.
 
  
 0.874
RSp0468
Probable general secretion pathway gspg-related transmembrane protein.
 
  
 0.859
gspC
Putative general secretion pathway related transmembrane protein.
  
 
 0.817
hrcR
Hrp conserved hrcr transmembrane protein; Involved in the secretion of PopA, a proteinaceous elicitor of the hypersensitivity response in plants; Belongs to the FliP/MopC/SpaP family.
  
 
 0.803
RSc2300
Putative cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
 
  
 0.797
RSp0140
Probable cog2165, type II secretory pathway, pseudopilin transmembrane protein.
 
  
 0.797
RSc2302
Probable cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
  
 0.794
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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