STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0506Putative outer-membrane lipoprotein. (266 aa)    
Predicted Functional Partners:
RSc2792
Putative outer membrane lipoprotein transmembrane.
  
     0.741
RSp0505
Putative d-3-phosphoglycerate dehydrogenase; oxidoreductase protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.549
cheD1
Probable methyl-accepting chemotaxisImcpIserine chemoreceptor protein transmembrane.
       0.510
asmA
Putative involved in outer membrane biogenesis transmembrane protein.
  
    0.459
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
     0.413
lptA
Putative signal peptide protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
     0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.