STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0519Putative signal transduction ggdef domain transmembrane protein. (347 aa)    
Predicted Functional Partners:
RSc3387
Probable two-component response regulator with eal domain transcription regulator protein.
  
 0.890
RSp1051
Probable signal transduction protein eal domain.
 
 0.869
RSc2515
Putative metal-dependent phosphohydrolase, hd region; protein.
 
 
 0.854
RSp1623
Putative response regulator with eal domain protein.
    0.830
RSp1208
Probable signal transduction protein eal-ggdef domains.
    0.811
RSc0592
Putative metal-dependent phosphohydrolase harboring a hd domain protein.
 
 
 0.649
prfB
Probable peptide chain release factor 2 (rf-2) protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.613
RSp0699
Putative peptide chain release factor homolog protein.
  
    0.613
RSc0588
Probable signal transduction protein eal-ggdef domains.
 
 
0.568
RSp0254
Probable signal transduction eal-ggdef domains transmembrane protein.
 
 
0.552
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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