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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0539Putative cog0683, abc-type branched-chain amino acid transport systems, periplasmic component abc transporter protein. (380 aa)    
Predicted Functional Partners:
RSc3285
Probable abc-type branched-chain amino acid transport systems, periplasmic component signal peptide protein.
  
     0.772
RSp0706
Probable amino-acid composite atp-binding transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.735
pilI
Putative twitching motility protein.
  
 
   0.625
RSc1062
Probable transmembrane protein.
  
     0.500
RSc0382
Probable response regulator transcription regulator protein.
  
   0.483
RSp0705
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.466
RSc2439
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.455
RSp0015
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.455
RSp0540
Probable hemagglutinin-related protein.
       0.455
RSp0541
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.455
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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