STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcnAPutative efflux nickel/cobalt transmembrane protein; Belongs to the NiCoT transporter (TC 2.A.52) family. (377 aa)    
Predicted Functional Partners:
RSp0553
Hypothetical protein of unknown function duf156.
 
   
 0.845
hoxN
Probable high affinity nickel transporter transmembrane protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
      
 0.625
arsR
Putative arsenical resistance operon repressor transcription regulator protein.
      
 0.586
RSc0753
Probable transmembrane protein.
  
     0.483
gstN
Probable glutathione s-transferase protein.
  
     0.481
sorB
Probable sulfite:cytochrome c oxidoreductase (subunit b) oxidoreductase protein.
  
     0.449
adhA
Putative propanol-preferring alcohol dehydrogenase oxidoreductase protein.
      
 0.443
copZ
Probable copper ion-binding protein.
      
 0.443
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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