STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0564Putative lipoprotein. (347 aa)    
Predicted Functional Partners:
RSp0563
Putative thiol-disulfide isomerase or thioredoxin protein.
 
     0.823
RSc3390
Probable porin signal peptide protein.
  
    0.616
RSp0719
Hypothetical signal peptide protein.
 
    0.607
RSp0720
Probable signal peptide protein.
  
     0.596
RSp0565
Hypothetical signal peptide protein.
       0.541
RSc0610
Putative signal peptide protein.
  
     0.518
RSp1168
Probable transmembrane protein.
  
     0.481
RSc2294
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.461
RSc0450
Probable atp-sensitive inward rectifier potassium channel related transmembrane protein.
  
     0.450
RSc2295
Hypothetical signal peptide protein.
  
     0.444
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.