STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbhAProbable exoglucanase a (1,4-beta-cellobiosidase) protein; Belongs to the glycosyl hydrolase family 6. (572 aa)    
Predicted Functional Partners:
egl
Endoglucanase precursor (endo-1,4-beta-glucanase)(cellulase) protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 0.990
popW
Probable harpin protein with pectate lyase domain.
 
 
 0.818
pme
Pectinesterase precursor (pectin methylesterase) (pe). transmembrane protein; Involved in maceration and soft-rotting of plant tissue. Belongs to the pectinesterase family.
  
   
 0.703
RSc1717
Probable esterase signal peptide protein.
  
 
 0.610
RSp1245
Putative arylesterase protein.
  
 
 0.610
pehB
Exo-poly-galacturonosidase signal peptide protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.595
pehC
Polygalacturonase transmembrane protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.593
RSp0275
Putative glycosyl hydrolase family 18 with carbohydrate binding domain transmembrane protein.
 
   
 0.588
RSp1228
Putative signal peptide protein.
 
     0.546
pglA
Polygalacturonase precursor (pga) (pectinase). signal peptide protein; Contributes to the wilt disease production on tomato; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.487
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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