STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0595Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (136 aa)    
Predicted Functional Partners:
RSp0596
Probable transmembrane protein.
     0.991
gstL
Probable glutathione s-transferase protein.
 
 
   0.731
ppiB
Probable peptidyl-prolyl cis-trans isomerase b (ppiase b) (rotamase b)(cypb protein); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.577
RSc0194
Probable zinc-dependent alcohol dehydrogenase oxidoreductase protein.
   
 
 0.575
RSp1422
Putative peptide synthetase protein.
      
 0.570
rhlE1
Probable atp-dependent rna helicase protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
    
 
 0.565
RSc0243
Putative pca transcription factor pcaq; transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
   
  
 0.563
RSp1469
Probable tyrosine phosphatase protein.
     
 0.561
RSc1598
Probable two-component transmembrane sensor histidine kinase transcription regulator protein.
      
 0.550
RSc1982
Probable dna-methyltransferase (dna-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family.
      
 0.550
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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