STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnBPutative glyoxalase/bleomycin resistance protein/dioxygenase. (143 aa)    
Predicted Functional Partners:
RSp0637
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    0.954
phnA
Probable phna protein alkylphosphonate uptake.
     
 0.828
RSp0597
Putative 3-demethylubiquinone-9 3-methyltransferase; protein.
 
  
 0.785
RSp0600
Conserved hypothetical protein 2246; Miscellaneous; hypothetical/global homology.
       0.564
RSc3305
Miscellaneous; hypothetical/global homology.
  
    0.536
trpD3
Putative anthranilate phosphoribosyltransferase protein.
      
 0.528
cobB-2
Putative nad-dependent protein deacetylase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily.
  
    0.418
RSc1651
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
    0.412
RSc1960
Putative transcriptional regulatory dna-binding transcription regulator protein.
 
    0.408
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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