STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaEProbable ferredoxin reductase protein. (363 aa)    
Predicted Functional Partners:
paaB
Probable phenylacetic acid degradation protein.
 
 0.999
paaC
Probable phenylacetic acid degradation protein.
 0.999
paaD
Probable phenylacetic acid degradation protein.
 
 0.999
paaA
Probable phenylacetic acid degradation protein.
 
 0.998
paaI
Probable phenylacetic acid degradation protein.
 
 
 0.991
paaK
Probable phenylacetyl-coa-ligase protein; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.975
paaG1
Probable enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.944
iscU
Probable iron-binding protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.823
RSc1810
Probable polyketide synthase protein.
   
 0.793
soxA2
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
  
  
 0.694
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.