STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0613Probable transcription regulator protein. (215 aa)    
Predicted Functional Partners:
paaC
Probable phenylacetic acid degradation protein.
 
     0.679
RSp0702
Putative 2-polyprenyl-6-methoxyphenol hydroxylase and related fad-dependent oxidoreductases oxidoreductase protein.
  
     0.654
paaE
Probable ferredoxin reductase protein.
 
  
 0.652
paaD
Probable phenylacetic acid degradation protein.
 
     0.647
RSp0701
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.632
paaA
Probable phenylacetic acid degradation protein.
 
     0.603
paaI
Probable phenylacetic acid degradation protein.
 
     0.597
paaB
Probable phenylacetic acid degradation protein.
 
     0.559
RSp0703
Putative beta-lactamase-like, zn-dependent hydrolases protein.
  
     0.486
RSp1314
Putative zn-dependent hydrolase protein.
  
     0.473
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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