STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0627Putative ferredoxin protein. (109 aa)    
Predicted Functional Partners:
nuoE
Probable nadh dehydrogenaseI(chain e) oxidoreductase protein.
 
 
 0.849
RSc2373
Probable formate dehydrogenase (large subunit) oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.835
RSp0625
Probable magnesium chelatase (subunits dI protein.
 
     0.835
cobN
Probable cobalamin biosynthesis protein.
 
     0.825
hoxN
Probable high affinity nickel transporter transmembrane protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.783
nuoM
Probable transmembrane nadh dehydrogenaseI(chain m) oxidoreductase protein.
  
  
 0.692
RSc3122
Putative pyruvate:ferredoxin (flavodoxin) oxidoreductase; oxidoreductase protein.
  
  
 0.491
cobH
Putative precorrin isomerase transmembrane protein.
 
   
 0.470
cobL
Probable precorrin-6b methylase methyltransferase protein.
 
     0.454
nuoH
Probable transmembrane nadh dehydrogenaseI(chain h) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
  
  
 0.438
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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