STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxNProbable high affinity nickel transporter transmembrane protein; Belongs to the NiCoT transporter (TC 2.A.52) family. (357 aa)    
Predicted Functional Partners:
RSp0625
Probable magnesium chelatase (subunits dI protein.
       0.854
cobN
Probable cobalamin biosynthesis protein.
       0.799
RSp0627
Putative ferredoxin protein.
       0.782
RSp0614
Probable reductase; oxidoreductase protein.
 
   
 0.733
mntH1
Putative manganese transport transmembrane protein.
  
   
 0.688
RSc2009
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the UPF0246 family.
 
      0.652
speH
Probable s-adenosylmethionine decarboxylase related transmembrane protein; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.
      
 0.631
glgA
Probable glycogen synthase protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
      
 0.559
treY
Probable maltooligosyl trehalose synthase transmembrane protein.
      
 0.548
acpA
Putative acid phosphatase protein.
  
     0.515
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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