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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0635Probable acyltransferase transmembrane protein. (375 aa)    
Predicted Functional Partners:
RSp0611
Probable transmembrane protein.
  
     0.651
RSp0636
Putative rna polymerase sigma factor containing a tpr repeat domain transcription regulator protein; Belongs to the sigma-70 factor family.
       0.542
RSc1806
Probable polyketide synthase protein.
 
   
 0.523
RSc3285
Probable abc-type branched-chain amino acid transport systems, periplasmic component signal peptide protein.
  
     0.504
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.504
epsB
Putative tyrosine-protein kinase epsb (eps ipolysaccharide export epsb). transmembrane; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. May be involved in an ATP-dependent process in the pathway for EPS I production, possibly export of the trimeric repeat units across the inner membrane or their polymerization (By similarity).
     
 0.501
RSp1522
Probable transmembrane protein.
     
 0.496
RSp0637
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.481
RSc1400
Putative transmembrane protein.
  
     0.453
RSc1297
Probable pseudogene (sterol desaturase fragment) transmembrane protein.
 
    0.420
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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