STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0652Probable acyl-coa dehydrogenase oxidoreductase protein. (377 aa)    
Predicted Functional Partners:
etfA
Probable electron transfer flavoprotein (alpha-subunit).
 
 0.961
RSc2016
Putative aminoglycoside phosphotransferase protein.
 
 
 0.916
RSc1759
3-hydroxyacyl-CoA dehydrogenase; Probable trifunctonal: enoyl-coa hydratase and delta3-cis-delta2-trans-enoyl-coa isomerase and 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
  
 0.909
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
 
 0.859
eftA
Putative electron transfer flavoprotein alpha-subunit (alpha-etf).
 
 
 0.858
RSp0787
Putative amp-dependent synthetase and ligase transmembrane protein.
 
 
    0.837
paaF
Putative enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.778
paaG2
Putative enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.773
paaH1
Probable 3-hydroxybutyryl-coa dehydrogenase oxidoreductase protein.
 0.760
RSp0648
Probable enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.733
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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