STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0653Probable transcription regulator protein. (387 aa)    
Predicted Functional Partners:
RSp0652
Probable acyl-coa dehydrogenase oxidoreductase protein.
       0.538
RSp1030
Probable cog3687, predicted metal-dependent hydrolase protein.
  
     0.515
RSc0535
Hypothetical signal peptide protein.
  
     0.479
RSp0641
Probable non ribosomal peptide synthetase protein.
 
   
 0.477
RSc3080
Probable transcription regulator protein.
  
 
   0.463
RSc0013
Putative esterase of the alpha-beta hydrolase superfamily protein.
  
     0.436
RSp0651
Probable acetyl-coenzyme a synthetase (acetate--coa ligase) protein.
       0.427
RSc0473
Putative acyl-coa dehydrogenase oxidoreductase protein.
  
   
 0.408
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.