STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copCProbable copper resistance c signal peptide protein. (128 aa)    
Predicted Functional Partners:
copD
Probable copper resistance d transmembrane protein.
  
 0.982
copB
Probable copper resistance protein b.
   
 0.969
copR
Probable two component response regulator transcription regulator protein.
  
  
 0.842
copA
Probable copper resistance transmembrane protein.
 
   
 0.787
copS
Probable two component sensor histidine kinase transcription regulator protein; Member of a two-component regulatory system.
 
  
 0.761
RSp1642
Probable transmembrane protein.
 
    0.759
RSc1546
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.740
RSc0038
Putative transmembrane protein.
  
    0.732
RSp0971
Probable transmembrane protein.
  
     0.685
ctaA
Putative heme o oxygenase (cytochrome aa3-controlling) transmembrane protein.
      
 0.587
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.