STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0672Lrr-gala family type III effector protein (gala 2). (1035 aa)    
Predicted Functional Partners:
RSp0097
Probable ankyrin-repeat harboring protein.
 
     0.699
popC
Type III effector protein popc; Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.
  
     0.568
RSp0209
Probable hydroxylase protein.
  
     0.536
RSp0842
Putative leucine-rich-repeat type III effector protein.
  
     0.526
RSc0257
Putative type III effector protein with ankyrin repeats.
 
     0.517
RSp1609
Probable acid sphingomyelinase-like phosphodiesterase transmembrane protein.
  
     0.488
RSp0028
Lrr-gala family type III effector protein (gala 3).
  
   
0.482
RSc2161
Heme chaperone HemW; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
     0.461
RSc1800
Probable lrr-gala family type III effector protein (gala 4).
  
   
0.427
RSp0914
Lrr-gala family type III effector protein (gala 1).
  
   
0.424
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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