STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
metRPutative transcriptional activator metr transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
 
   
 0.847
rpsQ
Probable 30s ribosomal subunit protein s17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
      
 0.630
RSc2497
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.566
nrdR
Putative transcriptional regulator protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
  
   
 0.561
metY
Probable o-acetylhomoserine (thiol)-lyase (methionine/homocysteine synthase) protein.
      
 0.550
metX
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.
      
 0.548
arsR
Putative arsenical resistance operon repressor transcription regulator protein.
   
  
 0.544
RSp1571
Probable transcriptional regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.532
RSp0308
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.479
RSc1880
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.476
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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