STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0700Probable rtcb-like protein. (379 aa)    
Predicted Functional Partners:
RSp0699
Putative peptide chain release factor homolog protein.
 
  
 0.952
rtcA
Probable rna 3'-terminal phosphate cyclase (rna-3'-phosphate cyclase) (rna cyclase) protein; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
 
  
 0.861
rtcR
Probable sigma-54 interacting transcription regulator protein.
 
   
 0.747
RSc0225
Putative cog3541, nucleotidyltransferase protein.
 
    0.717
RSc1851
Putative transcription regulator protein.
  
     0.462
RSc1849
Putative transcription regulator protein.
  
     0.452
RSc0983
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.450
pntB2b
Probable nad(p) transhydrogenase subunit beta (part 2) oxidoreductase protein.
 
      0.431
RSp0701
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.409
RSp0702
Putative 2-polyprenyl-6-methoxyphenol hydroxylase and related fad-dependent oxidoreductases oxidoreductase protein.
       0.404
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.