STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0709Putative cytochrome p-450-like monooxygenase oxidoreductase protein; Belongs to the cytochrome P450 family. (398 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
 
 0.992
vanB
Probable vanillate o-demethylase (vanillate degradation ferredoxin-like) oxidoreductase protein.
 0.985
RSc1806
Probable polyketide synthase protein.
 
 0.966
RSp1422
Putative peptide synthetase protein.
 
 
 0.966
RSp0642
Probable non ribosomal peptide synthetase protein.
 
 
 0.958
RSc1811
Putative siderophore synthetase protein.
  
 
 0.947
RSp1419
Putative peptide synthase protein.
  
 0.941
polA
Probable dna polymeraseIprotein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.937
RSc1810
Probable polyketide synthase protein.
 
 0.894
nagAa
Probable ferredoxin oxidoreductase oxidoreductase protein.
 
 0.846
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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