STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0764Probable transmembrane protein. (495 aa)    
Predicted Functional Partners:
RSp0765
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
     
 0.960
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.770
RSc1810
Probable polyketide synthase protein.
  
 
 0.732
RSp0762
Miscellaneous; hypothetical/partial homology.
  
    0.726
RSp0763
Probable transmembrane protein.
     
 0.717
RSp0766
Probable transmembrane protein.
       0.693
RSp0761
Putative outer membrane protein.
       0.657
fabD
Probable malonyl coa-[acyl-carrier-protein] transacylase.
  
 
 0.609
fabI
Probable enoyl-[acyl-carrier-protein] reductase [nadh] oxidoreductase.
  
  
 0.551
accD
Probable acetyl-coenzyme a carboxylase carboxyl transferase (subunit beta) protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.549
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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