STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0787Putative amp-dependent synthetase and ligase transmembrane protein. (559 aa)    
Predicted Functional Partners:
RSp1422
Putative peptide synthetase protein.
 
 0.991
RSc1811
Putative siderophore synthetase protein.
 
 0.983
RSp0791
Putative acyl carrier protein.
 
 
 0.967
RSp0641
Probable non ribosomal peptide synthetase protein.
 
0.940
RSp1434
Putative acyl-coa synthetases(amp-forming) protein.
 
    
0.927
RSp0642
Probable non ribosomal peptide synthetase protein.
 
0.925
RSc1810
Probable polyketide synthase protein.
 0.922
fabD
Probable malonyl coa-[acyl-carrier-protein] transacylase.
    
 0.905
fabF1
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.905
kbl
Probable 2-amino-3-ketobutyrate coenzyme a ligase protein; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
 
 0.905
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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