STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0787Putative amp-dependent synthetase and ligase transmembrane protein. (559 aa)    
Predicted Functional Partners:
RSp1422
Putative peptide synthetase protein.
  
 0.992
RSc1811
Putative siderophore synthetase protein.
  
 0.977
RSp0791
Putative acyl carrier protein.
 
 
 0.974
RSc1810
Probable polyketide synthase protein.
 0.970
RSp0641
Probable non ribosomal peptide synthetase protein.
 
0.964
RSp1434
Putative acyl-coa synthetases(amp-forming) protein.
 
    
0.927
RSp0642
Probable non ribosomal peptide synthetase protein.
  
0.909
fabF1
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.906
fabD
Probable malonyl coa-[acyl-carrier-protein] transacylase.
    
 0.905
kbl
Probable 2-amino-3-ketobutyrate coenzyme a ligase protein; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
  
 0.901
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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