STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0788Putative carbamoyltransferase; protein. (581 aa)    
Predicted Functional Partners:
RSp0789
Miscellaneous; hypothetical/partial homology.
 
     0.862
RSp0791
Putative acyl carrier protein.
 
     0.762
RSp0792
Putative fatty acid desaturase transmembrane protein.
 
     0.748
RSp0787
Putative amp-dependent synthetase and ligase transmembrane protein.
 
     0.704
RSp0790
Putative predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) protein.
       0.672
RSp0786
Probable cog0332, 3-oxoacyl-[acyl-carrier-protein].
 
     0.593
RSp1492
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.587
ligA
Putative dna ligase (polydeoxyribonucleotide synthase [nad+]) protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
      
 0.550
RSp1422
Putative peptide synthetase protein.
 
   
 0.549
hutH2
Probable histidine ammonia-lyase protein.
      
 0.546
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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