STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0788Putative carbamoyltransferase; protein. (581 aa)    
Predicted Functional Partners:
RSp0789
Miscellaneous; hypothetical/partial homology.
 
     0.863
RSp0791
Putative acyl carrier protein.
 
     0.763
RSp0792
Putative fatty acid desaturase transmembrane protein.
 
     0.749
RSp0787
Putative amp-dependent synthetase and ligase transmembrane protein.
 
     0.704
RSp0790
Putative predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) protein.
  
    0.672
RSp0786
Probable cog0332, 3-oxoacyl-[acyl-carrier-protein].
 
     0.593
RSp1492
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.588
nuoH
Probable transmembrane nadh dehydrogenaseI(chain h) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
      
 0.536
hutH2
Probable histidine ammonia-lyase protein.
      
 0.535
hemH
Probable ferrochelatase (protoheme ferro-lyase) (hemesynthetase) protein; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
      
 0.527
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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