STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0827Probable dehydrogenase protein. (528 aa)    
Predicted Functional Partners:
RSp0826
Probable 5-dehydro-4-deoxyglucarate dehydratase (5-keto-4-deoxy-glucarate dehydratase) (kdgdh) protein; Belongs to the DapA family.
 
 
 0.986
odhA
Probable oxoglutarate dehydrogenase oxidoreductase protein.
   
 
 0.824
sucA
Probable 2-oxoglutarate dehydrogenase e1 decarboxylase component oxidoreductase protein.
   
 
 0.824
icd
Probable isocitrate dehydrogenase [nadp] oxidoreductase protein.
   
 0.819
gudD2
Probable glucarate dehydratase protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.664
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.586
gudP
Putative glucarate transporter (d-glucarate permease) transmembrane protein.
       0.536
RSc1806
Probable polyketide synthase protein.
  
 
 0.530
iolB
Putative myo-inositol catabolism protein.
 
  
 0.527
RSp1011
Probable threonine dehydrogenase or related zn-dependent dehydrogenase oxidoreductase protein.
 
 
 0.521
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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