STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0827Probable dehydrogenase protein. (528 aa)    
Predicted Functional Partners:
RSp0826
Probable 5-dehydro-4-deoxyglucarate dehydratase (5-keto-4-deoxy-glucarate dehydratase) (kdgdh) protein; Belongs to the DapA family.
 
 
 0.985
odhA
Probable oxoglutarate dehydrogenase oxidoreductase protein.
   
 0.855
sucA
Probable 2-oxoglutarate dehydrogenase e1 decarboxylase component oxidoreductase protein.
   
 0.855
icd
Probable isocitrate dehydrogenase [nadp] oxidoreductase protein.
   
 0.854
gudD2
Probable glucarate dehydratase protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.663
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.538
gudP
Putative glucarate transporter (d-glucarate permease) transmembrane protein.
       0.536
RSp0832
Probable gluconolactonase protein.
 
  
 0.531
RSp0825
Putative cog0421, spermidine synthase protein.
   
 
 0.477
RSc0507
Probable amino acid dehydrogenase transmembrane protein.
  
    0.452
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.