STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0831Putative nad-dependent epimerase/dehydratase; protein. (282 aa)    
Predicted Functional Partners:
RSp0832
Probable gluconolactonase protein.
     0.979
garD
Probable d-galactarate dehydratase (d-galactarate dehydrogenase) protein.
 
   
 0.805
pglA
Polygalacturonase precursor (pga) (pectinase). signal peptide protein; Contributes to the wilt disease production on tomato; Belongs to the glycosyl hydrolase 28 family.
   
 
  0.804
RSc1806
Probable polyketide synthase protein.
  
 
 0.800
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.798
RSp0826
Probable 5-dehydro-4-deoxyglucarate dehydratase (5-keto-4-deoxy-glucarate dehydratase) (kdgdh) protein; Belongs to the DapA family.
 
   
 0.755
pehC
Polygalacturonase transmembrane protein; Belongs to the glycosyl hydrolase 28 family.
  
    0.720
exuT1
Probable hexuronate transporter transmembrane protein.
      0.699
gudD2
Probable glucarate dehydratase protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.698
rpsS
Probable 30s ribosomal protein s19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.642
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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