STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0842Putative leucine-rich-repeat type III effector protein. (648 aa)    
Predicted Functional Partners:
RSc0257
Putative type III effector protein with ankyrin repeats.
  
     0.654
RSp1215
Probable pseudogene (truncated type III effector protein with ankyrin repeats).
  
     0.585
RSp0097
Probable ankyrin-repeat harboring protein.
  
     0.584
popP1
Type III effector protein popp1.
      
 0.567
popP2
Type III effector protein popp2.
      
 0.566
avrA
Type III effector protein avra.
      
 0.547
ripG
Type III effector protein gala6.
  
     0.544
RSp0672
Lrr-gala family type III effector protein (gala 2).
  
     0.526
RSp0028
Lrr-gala family type III effector protein (gala 3).
  
     0.506
RSc1788
Probable ankyrin repeat harboring signal peptide protein.
  
     0.505
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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