STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prhR3-compartiment signal transduction system, component prhr transmembrane protein. (316 aa)    
Predicted Functional Partners:
prhI
3-compartiment signal transduction system, sigma factor prhi transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.992
RSc2919
Putative iron transport-sensory transduction transmembrane protein.
  
  
  0.975
prhA
Outer membrane receptor prha signal peptide protein.
 
 
 0.938
prhJ
Transcription regulator prhj transcription regulator protein.
     
 0.896
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.861
RSc2918
Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.835
RSc0800
Putative ferrisiderophore receptor signal peptide protein.
 
 
 0.833
RSc2920
Putative hydroxamate-type ferrisiderophore receptor signal peptide protein.
 
 
 0.784
RSp0414
Probable ferric siderophore receptor protein.
 
  
 0.668
hrpG
Response regulator transcription regulator protein.
      
 0.637
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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