STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpYHrp pilus subunit hrpy protein. (82 aa)    
Predicted Functional Partners:
hrpX
Hrpx protein.
     
 0.806
hrpW
Hrpw transmembrane protein.
     
 0.688
hrpV
Hrpv protein.
     
 0.684
hrpK
Hrpk protein.
     
 0.645
hrpH
Hrph protein.
     
 0.638
hpaP
Hrp associated protein.hpap.
     
 0.612
hrpJ
Hrpj protein.
     
 0.552
hrpB
Regulatory hrpb. transcription regulator protein; Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium.
     
 0.544
hrpG
Response regulator transcription regulator protein.
     
 0.504
hpaB
Hypothetical tir chaperone-like protein.
     
 0.490
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.