STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popCType III effector protein popc; Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway. (984 aa)    
Predicted Functional Partners:
RSc0257
Putative type III effector protein with ankyrin repeats.
  
     0.701
RSp1215
Probable pseudogene (truncated type III effector protein with ankyrin repeats).
  
     0.625
RSp0097
Probable ankyrin-repeat harboring protein.
  
     0.624
ripG
Type III effector protein gala6.
  
     0.593
RSc1800
Probable lrr-gala family type III effector protein (gala 4).
  
     0.574
RSp0672
Lrr-gala family type III effector protein (gala 2).
  
     0.568
RSp0914
Lrr-gala family type III effector protein (gala 1).
  
     0.565
RSc1788
Probable ankyrin repeat harboring signal peptide protein.
  
     0.545
RSc1801
Probable lrr-gala family type III effector protein (gala 5).
  
     0.543
ugd
Probable udp-glucose 6-dehydrogenase (ugd) oxidoreductase protein.
      
 0.538
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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