STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popBType III effector protein popb; Probably involved in host-pathogen interactions. (174 aa)    
Predicted Functional Partners:
popA
Type III effector protein popa1 [contains: popa2 protein; Acts as a specific hypersensitive response (HR) elicitor. Has activity on tobacco (non-host plant) and petunia but is without activity on tomato (host plant); PopA3 seems to be more active than a PopA1-PopA2 mixture.
       0.570
hrpB
Regulatory hrpb. transcription regulator protein; Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium.
      
 0.533
RSc3272
Putative type III effector protein.
      
 0.532
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
      
 0.532
popC
Type III effector protein popc; Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.
       0.496
RSc1721
Probable transcription regulator protein.
      
 0.475
hrpY
Hrp pilus subunit hrpy protein.
      
 0.435
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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