STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popBType III effector protein popb; Probably involved in host-pathogen interactions. (174 aa)    
Predicted Functional Partners:
popA
Type III effector protein popa1 [contains: popa2 protein; Acts as a specific hypersensitive response (HR) elicitor. Has activity on tobacco (non-host plant) and petunia but is without activity on tomato (host plant); PopA3 seems to be more active than a PopA1-PopA2 mixture.
       0.570
RSc3272
Putative type III effector protein.
      
 0.550
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
      
 0.550
RSc1721
Probable transcription regulator protein.
      
 0.549
hrpB
Regulatory hrpb. transcription regulator protein; Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium.
      
 0.549
popC
Type III effector protein popc; Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.
       0.496
hrpY
Hrp pilus subunit hrpy protein.
      
 0.439
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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