STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0881Putative glycosyl hydrolase transmembrane protein. (767 aa)    
Predicted Functional Partners:
pglA
Polygalacturonase precursor (pga) (pectinase). signal peptide protein; Contributes to the wilt disease production on tomato; Belongs to the glycosyl hydrolase 28 family.
 
     0.839
tzs
Isopentenyl transferase protein; Transfers dimethylallyl groups to AMP as part of the biosynthesis of cytokinin phytohormones; Belongs to the isopentenyl transferase family.
  
     0.757
RSp1137
Putative rhs-related transmembrane protein.
  
     0.743
RSp1029
Putative transmembrane acyl-coa desaturase (fatty acid desaturase) oxidoreductase protein.
  
     0.742
RSp1539
Probable hemagglutinin-related protein.
  
     0.724
RSc3426
Probable transmembrane protein.
  
     0.714
RSp1283
Putative lamb type porin transmembrane protein.
  
     0.704
RSc3183
Probable hemagglutinin-related signal peptide protein.
  
     0.678
RSp1536
Probable hemagglutinin-related signal peptide protein.
  
     0.676
RSc3188
Putative hemagglutinin-related protein.
  
     0.648
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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