STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmtDProbable hcomoda decarboxylase protein. (222 aa)    
Predicted Functional Partners:
cmtC
Probable 2,3-dihydroxy-p-cumate-3,4-dioxygenase oxidoreductase protein.
 
  
 0.998
dmpC
2-hydroxymuconic semialdehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
 
  
 0.977
dmpG
Probable 4-hydroxy-2-oxovalerate aldolase protein; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family.
 
  
 0.806
RSp0891
Putative hydratase/decarboxylase; protein.
 
     0.788
RSp0892
Putative hydratase/decarboxylase; protein.
 
     0.786
dmpF
Probable acetaldehyde dehydrogenase oxidoreductase protein; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
 
     0.773
dmpI
Probable tautomerase protein; Belongs to the 4-oxalocrotonate tautomerase family.
     
 0.750
RSc1999
Putative citrate lyase beta subunit protein; Belongs to the HpcH/HpaI aldolase family.
   
  
 0.710
nagI
Probable gentisate 1,2-dioxygenase oxidoreductase protein.
  
     0.622
nagH
Putative salicylate-5-hydroxylase small oxygenase component oxidoreductase protein.
 
     0.619
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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