STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0904Putative choline dehydrogenase and related flavoproteins oxidoreductase. (647 aa)    
Predicted Functional Partners:
RSp0905
Putative transmembrane protein.
       0.723
RSc0772
Putative oxidoreductase dehydrogenase (cytochrome c subunit) signal peptide protein.
 
 
 0.715
RSp0989
Putative cytochrome c, monohaem transmembrane protein.
 
 
 0.691
RSp1453
Putative cytochrome c signal peptide protein.
 
 
 
 0.659
RSc0770
Putative transmembrane dehydrogenase (small subunit) oxidoreductase protein.
   
   0.599
RSp0641
Probable non ribosomal peptide synthetase protein.
 
   
 0.566
RSp0906
Putative signal peptide protein.
       0.554
RSp0903
Probable transmembrane protein.
       0.520
RSc1806
Probable polyketide synthase protein.
     
 0.489
RSp1503
Probable major anaerobically induced outer membrane transmembrane protein; Belongs to the multicopper oxidase family.
 
 
 0.454
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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