STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0913Putative oxidoreductase, n-terminal; protein. (376 aa)    
Predicted Functional Partners:
RSp0914
Lrr-gala family type III effector protein (gala 1).
 
     0.550
lysS
Putative lysyl-trna synthetase (lysine--trna ligase) (lysrs) protein; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.549
iolC
Probable transferase kinase protein.
 
  
 0.465
RSc1248
Probable dehydrogenase oxidoreductase protein.
  
     0.449
RSc1247
Probable sugar phosphate isomerases/epimerases protein.
 
  
 0.442
iolG
Putative oxidoreductase myo-inositol 2-dehydrogenase signal peptide protein; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
  
     0.432
iolD
Putative acetolactate synthase protein; Belongs to the TPP enzyme family.
 
  
 0.431
RSp0912
Probable transcriptional regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.430
iolB
Putative myo-inositol catabolism protein.
 
  
 0.428
RSc2755
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.420
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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