STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0935Probable oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)    
Predicted Functional Partners:
RSp1434
Putative acyl-coa synthetases(amp-forming) protein.
 
  
 0.902
RSp0934
Probable amino acid transmembrane abc transporter protein.
    0.852
RSp0933
Probable amino acid transmembrane abc transporter protein.
 
    0.821
RSp0931
Probable amino-acid-binding periplasmic abc transporter protein.
 
   0.788
RSp0932
Probable amino-acid atp-binding abc transporter protein.
    0.757
RSp0937
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.747
RSp0697
Probable dehydrogenase/reductase oxidoreductase protein.
 
    0.738
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.708
nac
Probable nitrogen assimilation regulatory transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
     0.693
RSc2504
Probable short-chain dehydrogenase/reductase sdr; oxidoreductase protein.
    0.692
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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