STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0939Probable cog2049, allophanate hydrolase subunit 1 protein. (222 aa)    
Predicted Functional Partners:
RSp0938
Probable cog1984, allophanate hydrolase subunit 2 protein.
 
 0.999
RSc2170
Putative allophanate hydrolase subunit 2 protein.
 
 0.998
pxpA2
Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
 0.997
pxpA1
Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.948
RSp0937
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
    0.831
accC2
Putative biotin carboxylase protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.746
accB2
Putative biotin carboxyl carrier protein of acetyl-coa carboxylase (bccp); This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
    0.733
RSc2931
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.633
RSp0935
Probable oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.579
nac
Probable nitrogen assimilation regulatory transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
     0.562
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.