STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
idnDPutative l-idonate 5-dehydrogenase oxidoreductase protein. (344 aa)    
Predicted Functional Partners:
idnO
Probable gluconate 5-dehydrogenase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.938
RSp0945
Probable dehydrogenase oxidoreductase protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.773
RSp0946
Putative gluconate kinase protein.
  
  
 0.745
pntAa2
Probable nad(p) transhydrogenase (alpha subunit part 1) oxidoreductase protein.
  
  
 0.604
pntAb2
Probable transmembrane nad(p) transhydrogenase (alpha subunit part 2) transmembrane protein.
  
    0.590
pntB2a
Probable nad(p) transhydrogenase subunit beta (part 1) transmembrane protein.
       0.588
RSp0944
Probable transferase protein.
       0.571
fruB
Probable multiphosphoryl transfer protein mtp.
     
 0.534
aatA2
Probable aspartate aminotransferase a protein.
       0.514
kbl
Probable 2-amino-3-ketobutyrate coenzyme a ligase protein; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
  
 0.486
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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