STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tISRso6a-4Isrso3-transposase orfa protein. (354 aa)    
Predicted Functional Partners:
tISRso6b-4
Isrso6-transposase orfb protein.
 
 0.959
tISRso6b
Isrso6-transposase orfb protein.
 
 0.828
tISRso6b-2
Isrso6-transposase orfb protein.
 
 0.828
tISRso6b-3
Isrso6-transposase orfb protein.
 
 0.828
pntAb2
Probable transmembrane nad(p) transhydrogenase (alpha subunit part 2) transmembrane protein.
       0.580
pntB2a
Probable nad(p) transhydrogenase subunit beta (part 1) transmembrane protein.
       0.580
pntAa2
Probable nad(p) transhydrogenase (alpha subunit part 1) oxidoreductase protein.
       0.575
pntB2b
Probable nad(p) transhydrogenase subunit beta (part 2) oxidoreductase protein.
       0.551
idnD
Putative l-idonate 5-dehydrogenase oxidoreductase protein.
       0.450
RSp0946
Putative gluconate kinase protein.
       0.425
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.