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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0967Putative lipoprotein cog4273, uncharacterized conserved protein. (139 aa)    
Predicted Functional Partners:
RSp0969
Putative peptidase u32; protein.
 
    0.926
RSp0968
Putative lipid carrier protein sterol-binding protein.
 
    0.896
RSp0970
Probable peptidase u32; protein.
 
    0.839
RSp0971
Probable transmembrane protein.
 
    0.709
RSc2212
Putative beta-lactamase-like protein.
  
  
 0.612
narK1
Putative nitrite/nitrate transporter transmembrane protein.
 
     0.445
narG
Probable respiratory nitrate reductase alpha chain oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.417
dfp
Probable dna/pantothenate metabolism flavoprotein flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
   
    0.406
narI
Probable respiratory nitrate reductase transmembrane protein.
 
     0.400
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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