STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0988Probable transmembrane protein. (227 aa)    
Predicted Functional Partners:
RSp0987
Probable transmembrane protein.
     
 0.792
RSp0989
Putative cytochrome c, monohaem transmembrane protein.
 
  
 0.722
RSc2292
Putative transmembrane protein.
  
     0.698
coxM
Probable cytochrome c oxidase polypeptide II (cytochrome bb3 subunit 2) transmembrane protein.
  
 0.629
RSc3254
Putative thioredoxin fold harboring signal peptide protein.
 
 
 0.617
RSc0333
Putative thiol-disulfide isomerase or thioredoxin transmembrane protein.
  
 
 0.545
RSc2784
Putative ipr012335 thioredoxin fold transmembrane protein.
  
 
 0.545
ctaG
Probable cytochrome c oxidase assembly transmembrane protein.
  
 
 0.530
coxB
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.492
ctaA
Putative heme o oxygenase (cytochrome aa3-controlling) transmembrane protein.
  
 
 0.470
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.