STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1005Probable transmembrane protein. (223 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 0.643
RSc1806
Probable polyketide synthase protein.
   
 0.626
RSp0709
Putative cytochrome p-450-like monooxygenase oxidoreductase protein; Belongs to the cytochrome P450 family.
   
 0.580
RSp1006
Putative eps aminotransferase protein; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.578
RSp1008
Probable glycosyl transferase transmembrane protein.
  
  
 0.573
rplF
Probable 50s ribosomal subunit protein l6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.536
RSp1007
Putative acetyl transferase protein.
  
    0.535
RSc0079
Probable transmembrane protein.
    
 
 0.531
RSp1009
Probable glycosyltransferase protein.
  
  
 0.494
RSp1013
Putative glycosyl transferase, group 1; protein.
  
  
 0.494
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.