STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1005Probable transmembrane protein. (223 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 0.704
RSp1008
Probable glycosyl transferase transmembrane protein.
  
  
 0.566
RSp1006
Putative eps aminotransferase protein; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.562
RSp1007
Putative acetyl transferase protein.
  
    0.530
RSc1806
Probable polyketide synthase protein.
   
 0.509
RSc0079
Probable transmembrane protein.
    
   0.501
epsA
epsIpolysaccharide export outer membrane epsa precursor. transmembrane protein; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. Belongs to the BexD/CtrA/VexA family.
  
  
 0.494
RSp0709
Putative cytochrome p-450-like monooxygenase oxidoreductase protein; Belongs to the cytochrome P450 family.
  
 0.485
RSp1009
Probable glycosyltransferase protein.
  
  
 0.485
RSp1013
Putative glycosyl transferase, group 1; protein.
  
  
 0.485
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.