STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1012Probable trimeric lpxa-like transferase protein. (170 aa)    
Predicted Functional Partners:
RSp1007
Putative acetyl transferase protein.
 
   
 0.900
RSp1008
Probable glycosyl transferase transmembrane protein.
 
  
 0.896
RSp1009
Probable glycosyltransferase protein.
 
  
 0.838
RSp1011
Probable threonine dehydrogenase or related zn-dependent dehydrogenase oxidoreductase protein.
  
  
 0.824
RSp1006
Putative eps aminotransferase protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.819
RSp1013
Putative glycosyl transferase, group 1; protein.
  
  
 0.801
RSp1010
Putative heparinase II/III-like protein.
       0.791
rfbC
Probable dtdp-4-dehydrorhamnose 3,5-epimerase protein; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.741
epsB
Putative tyrosine-protein kinase epsb (eps ipolysaccharide export epsb). transmembrane; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. May be involved in an ATP-dependent process in the pathway for EPS I production, possibly export of the trimeric repeat units across the inner membrane or their polymerization (By similarity).
  
  
 0.720
RSp0641
Probable non ribosomal peptide synthetase protein.
 
  
 0.699
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.