STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1013Putative glycosyl transferase, group 1; protein. (387 aa)    
Predicted Functional Partners:
RSp1011
Probable threonine dehydrogenase or related zn-dependent dehydrogenase oxidoreductase protein.
  
  
 0.809
RSp1012
Probable trimeric lpxa-like transferase protein.
  
  
 0.801
RSp1008
Probable glycosyl transferase transmembrane protein.
  
  
 0.788
RSp1010
Putative heparinase II/III-like protein.
       0.781
RSp1009
Probable glycosyltransferase protein.
       0.773
RSp1007
Putative acetyl transferase protein.
  
  
 0.709
RSp1006
Putative eps aminotransferase protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.704
epsE
epsIpolysaccharide export inner membrane epse. transmembrane protein; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. May play a role in export of EPS I or its intermediates across the membranes (By similarity); To E.coli bicyclomycin resistance protein (BCR).
  
  
 0.677
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.579
RSp0237
Putative 1,4-alpha-glucan branching enzyme protein.
   
 0.578
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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