STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1030Probable cog3687, predicted metal-dependent hydrolase protein. (250 aa)    
Predicted Functional Partners:
RSp1029
Putative transmembrane acyl-coa desaturase (fatty acid desaturase) oxidoreductase protein.
     0.964
RSp1028
Hypothetical protein; Miscellaneous; unknown.
      0.846
RSc3080
Probable transcription regulator protein.
 
     0.734
RSp0512
Probable papd-like; transmembrane protein.
  
     0.651
tzs
Isopentenyl transferase protein; Transfers dimethylallyl groups to AMP as part of the biosynthesis of cytokinin phytohormones; Belongs to the isopentenyl transferase family.
  
     0.618
RSc2263
Probable lipoprotein.
  
     0.581
RSp1539
Probable hemagglutinin-related protein.
  
     0.554
RSc3426
Probable transmembrane protein.
  
     0.516
RSp0653
Probable transcription regulator protein.
  
     0.515
RSp1080
Probable transmembrane protein.
  
     0.475
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.