STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1046Probable amino acid transporter transmembrane protein. (458 aa)    
Predicted Functional Partners:
RSp0282
Probable amino-acid permease transmembrane protein.
  
     0.621
RSp0240
Putative glycosidase possibly involved in trehalose metabolism protein.
   
 0.590
glgE
Putative alpha-amylase-related protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.590
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.561
RSc1806
Probable polyketide synthase protein.
  
 
 0.467
RSc1588
Probable amino-acid transporter transmembrane protein.
  
     0.457
RSc3162
Probable hemagglutinin-related autotransporter protein.
  
     0.445
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
  
  
 0.419
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
    
 0.412
speB
Probable agmatinase protein; Belongs to the arginase family.
 
 
 0.407
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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