STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1079Probable sigma-54 interacting transcription regulator protein. (467 aa)    
Predicted Functional Partners:
RSp1080
Probable transmembrane protein.
 
     0.836
rpoN1
Probable rna polymerase sigma n (sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.802
rpoN2
Probable rna polymerase sigma n (sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.802
tadD2
Probable pilus assembly tadd transmembrane protein.
 
    0.735
tadB2
Probable pilus assembly tadb transmembrane protein.
 
    0.697
cpaB2
Probable flp pilus assembly cpab; signal peptide protein.
 
    0.662
cpaE2
Probable pilus assembly protein.
  
    0.653
RSp1081
Probable signal peptide protein.
       0.643
RSp1088
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.618
cpaA2
Probable prepilin peptidase transmembrane protein.
  
    0.606
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.