STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1080Probable transmembrane protein. (541 aa)    
Predicted Functional Partners:
tadD2
Probable pilus assembly tadd transmembrane protein.
 
  
 0.965
cpaB2
Probable flp pilus assembly cpab; signal peptide protein.
 
  
 0.897
cpaC2
Probable pilus assembly, secretin cpac signal peptide protein; Belongs to the bacterial secretin family.
 
  
 0.896
RSp1081
Probable signal peptide protein.
 
    0.893
tadB2
Probable pilus assembly tadb transmembrane protein.
 
  
 0.883
tadC2
Probable pilus assembly tadc transmembrane protein.
 
  
 0.880
cpaE2
Probable pilus assembly protein.
 
  
 0.877
RSp1079
Probable sigma-54 interacting transcription regulator protein.
 
     0.836
tadG2
Putative cog4961, flp pilus assembly transmembrane protein.
 
    0.824
cpaF2
Probable secretion atpase protein.
 
  
 0.809
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.